DaMaoShan

building custom databases

6

Anyone tried building their own databases for hhblits ? I mean that from a protein fasta file to hhblits database. I am using the pipeline listed in wiki of hhsuite:...

Example: evalue0=1.0 evalue1=0.001 hhblits -i prot.fasta -o out0.hhr -ohhm out0.hhm -oa3m out0.a3m -e $evalue0 -d hhdb hhblits -i prot.fasta -o out1.hhr -ohhm out1.hhm -oa3m out1.a3m -e $evalue1 -d hhdb I...

Hi, Msmbuilder is a great project! I am trying to understand and use it. There is a series of papers on tICA For example, in "tICA-Metadynamics: Accelerating Metadynamics by Using...

Any one had succeeded to run this pipeline?

1

Anyone tried building their own databases for hhblits ? I mean that from a protein fasta file to hhblits database. I am using this pipeline ButI am very sorry that...