Zihao Duan

Sure. testDB_ss file is not allowed to upload in github, so I rename testDB_ss to testDB_ss.txt. Use "head -n 10 testDB", the file is displayed as garbled. `spacedust createsetdb testDB...

head -n 10 testDB_ss, 3Di seq (foldseek createdb cpu-version) head -n 10 testDB_ss, garbled (foldseek createdb gpu-version)

foldseek createdb test.faa testDB --prostt5-model weights --threads 1 head -n 5 testDB_ss DDDDFDDDDDDQKDKKDVVDDDKDWDDDPPDDDDD...... foldseek createdb test.faa testDB --prostt5-model weights --threads 1 --gpu 1 head -n 5 testDB_ss ʉʉʉʉʉʉʉʉʉʉʉʉʉʉʉʉʉʉʉʉʉəʉʉʉ ׮..ʉ.??.¹.¹.¹.ښ......

> Thanks a lot, that was very helpful. > > That was a recent MMseqs2 change breaking foldseek's createdb. Should be fixed now in the latest git commit. In fect,...