DNAcastigator

[LB20.pdf](https://github.com/LiuLabUB/HMMRATAC/files/4366527/LB20.pdf) [LB21.pdf](https://github.com/LiuLabUB/HMMRATAC/files/4366528/LB21.pdf) [LB27.pdf](https://github.com/LiuLabUB/HMMRATAC/files/4366529/LB27.pdf) [LB28.pdf](https://github.com/LiuLabUB/HMMRATAC/files/4366530/LB28.pdf) [LB29.pdf](https://github.com/LiuLabUB/HMMRATAC/files/4366531/LB29.pdf) [LB30.pdf](https://github.com/LiuLabUB/HMMRATAC/files/4366532/LB30.pdf) Thank you for the answer. Not all the plots seem perfect but unfortunately the use of --trim 3/2/1 didn't solve the problem

[E3_FW.pdf](https://github.com/LiuLabUB/HMMRATAC/files/4370338/E3_FW.pdf) [E3_HW.pdf](https://github.com/LiuLabUB/HMMRATAC/files/4370339/E3_HW.pdf) [E4-FW.pdf](https://github.com/LiuLabUB/HMMRATAC/files/4370340/E4-FW.pdf) [E3_FW.log](https://github.com/LiuLabUB/HMMRATAC/files/4370342/E3_FW.log) [E3_HW.log](https://github.com/LiuLabUB/HMMRATAC/files/4370343/E3_HW.log) [E3HW.log](https://github.com/LiuLabUB/HMMRATAC/files/4370344/E3HW.log) [E3HW2.log](https://github.com/LiuLabUB/HMMRATAC/files/4370345/E3HW2.log) [E4-FW.log](https://github.com/LiuLabUB/HMMRATAC/files/4370346/E4-FW.log) [FW-pboy.log](https://github.com/LiuLabUB/HMMRATAC/files/4370347/FW-pboy.log) [LB_20.log](https://github.com/LiuLabUB/HMMRATAC/files/4370348/LB_20.log) [LB_21.log](https://github.com/LiuLabUB/HMMRATAC/files/4370349/LB_21.log) [LB_27.log](https://github.com/LiuLabUB/HMMRATAC/files/4370350/LB_27.log) OK so, the files in the previous post are all from failed analysis, here you can find the...

perfect, many thanks for the help, I will try this last option while waiting for the next update.