Cyril Lagger

Thanks for the clarification, I will definitively try that whenever the ggplot2 issue is fixed.

Hi and sorry for the late reply, There is currently no exported function that allows users to add GO and KEGG pathways to custom LRIs. But we can try to...

Happy New Year! I just checked and it is probably because your new LRIs have no KEGG pathways to be associated with. To be more specific, for each LRI X:Y...

Hi! I am not sure if I understood your last message correctly. Did you manage to perform your analysis with your new LRI pairs? The fact that your new pairs...

Hi, First, please note that the purpose of the over-representation test is to identify ligand-receptor pairs (or else) that are consistently up-regulated (or down-) across the tissue, namely across **several**...

For function/GO terms, you can do the following for your LRI of interest: ``` library(scDiffCom) scDiffCom::LRI_mouse$LRI_curated_GO[LRI == "B2m:Cd247"] ``` This will return the GO IDs associated with this LRI that...

Hi, and thanks for the feedback! The choice between the two cases is yours, but you need to be consistent when interpreting the results. When performing differential analysis, LOGFCs are...