Quang Tran

(ERR): bowtie2-align exited with value 134

1

Hi bowtie2 developers, I align some contigs assembled from short-read using bowtie2-2.3.5.1. I got the error below while running. Is this because of long contigs? Length of contigs are ranging...

Error message shared.KillSwitch.kill

6

Hi Daniel, I got this error message for some samples: ``` Memory: max=211237m, total=211237m, free=207740m, used=3497m Input is being processed as paired Started output streams: 0.070 seconds. Warning! Changed from...

Can't open splitrim stats: No such file or directory

2

Hi, I got this error when I ran with the option "--input file_1.fastq,file_2.fastq" : > [00:00:00] Starting GOTTCHA v1.0c > [00:00:00] Auto set database level to SPECIES. > [00:00:00] Number...

Installation failed with INSTALL.sh

1

Hi, I did git clone gottcha, then ran INSTALL.sh. I got this error whiling running INSTALL.sh. Can you help fix this? > /usr/bin/ld: ext/opt/dmd2/linux/bin64/../lib64/libphobos2.a(cpuid_a5_687.o): relocation R_X86_64_32 against symbol `_D4core5cpuid18getcacheinfoCPUID2FNbNeZv14decipherCpuid2MFhZv3idsyG63h' can...

What is in spl.tsv and svs.bed ?

1

Could you clarify what data is contained in `spl.tsv`? Are they the name of column in bcf/vcf? Tumor-ID, Control-ID? And can you upload the `svs.bed`? Thanks, Coax