Ziyang "Claude" Hu

I installed latest version of hnswlib (0.8.0) and had two `hnswlib.Index` loaded from `.bin` files. They both contain same number of vectors (9138), and have same values of ef (10)...

Merge Eido into Peppy

4

# Likely solved ## [merging eido](https://github.com/pepkit/peppy/issues/492) ### merging `eido` is relocated and is now a module within `peppy`. ```python from peppy.eido.validation import validate_project from peppy import Project pep_proj = Project("path/to/project/config.yaml")...

`bedshift` has been fully integrated into [geniml](https://github.com/databio/geniml_dev/tree/master/geniml/bedshift), including [CLI](https://github.com/databio/geniml_dev/blob/3675f981f207d2d37eccc28d406d3ce65da5d747/geniml/cli.py#L464-L575), [pytests](https://github.com/databio/geniml_dev/blob/master/tests/test_bedshift.py), and [doc](https://github.com/databio/bedbase/blob/master/docs/geniml/tutorials/bedshift.md). This repository should be safe to deprecate. **I do not have repository options access**.