Citugulia40 comments

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                                            Citugulia40

Why need to refer a database when I build a customized database?

Hi, I am facing the same thing, are you able to get it? I am not able to get the exact steps to run the my 2 million query sequences...

Unable to get motif image

Hi, I want to use the retrained model but want to fine tune based on my data. I want to ask you, how did you prepared the dev.tsv and train.tsv...

Unable to get motif image

Thanks for the reply. Yes, I am also not getting the motif image on the test data. I want able to make it using https://weblogo.threeplusone.com/manual.html#CLI

ValueError: A gene signature must have at least one gene.

The `region_sets `output: {'topics_otsu': {'Topic1': +--------------+-----------+-----------+ | Chromosome | Start | End | | (category) | (int64) | (int64) | |--------------+-----------+-----------| | chr1 | 35192543 | 35193043 | | chr1...

ValueError: Length mismatch: Expected axis has 0 elements, new values have 3 elements

Hi, The output for these are as follows: ``` for DAR in markers_dict.keys(): regions = markers_dict[DAR].index[markers_dict[DAR].index.str.startswith('chr')] #only keep regions on known chromosomes if len(regions) == 0: print(DAR) ``` Inhibitory Microglia-PVM...