Chad Mansfield

Ragout error - TypeError: expected str, bytes or os.PathLike object, not NoneType

2

Since I read the paper for Ragout I've been really excited to use it for my work. I've been trying to improve a genome assembly for tree swallow using a...

Rascaf Error - Unknown Genome Name

12

I am trying to improve the scaffolding on a genome assembled using Supernova and Chromium 10x. I've aligned my reads to the genome using hisat2 and used samtools to sort/convert...

I finally got funannotate to run (using the dockerfile) after your help last time and I've hit another obstacle. The pipeline will get to busco and freeze at 90%. I...

Funannotate Run time + Perl error

5

This is not so much as a bug as a series of small questions. I am a toxicologist who was thrown into the deep end of the bioinformatics pool and...