ChristopherBottomsOMRF comments

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                                            ChristopherBottomsOMRF

se3-transformer issue when installing

Ditto what @linonetwo said, except I'm doing it with bash/GNU Linux: ``` $ pip install -e . Obtaining file:///path/to/conda/24.3.0/envs/RFdiffusion/RFdiffusion Preparing metadata (setup.py) ... done Requirement already satisfied: torch in /path/to/conda/24.3.0/envs/SE3nv/lib/python3.9/site-packages...

jax_config.define_bool_state('flax_' + name, default, help) AttributeError: 'Config' object has no attribute 'define_bool_state'

Sorry, actually, the issue remains. I'd run into another issue that preceded this one (i.e. I had to update the version for tf-nightly in speed_ppi.yml to 2.16.0).

Whether to RunPCA() using the integrated assay after CCA Integration to run UMAP and following clustering...

Totally revamped: > 1. Do I need to runPCA with integrated assay after running CCA integration like what ChatGPT suggested being the more practical route? I would think that you'd...