Christian Hinge

### Summary The `ants.ConvertScalarImageToRGB` wraps the cmdline tool `ConvertScalarImageToRGB`, which takes mainly positional arguments. Some of the positional arguments are optional, such as the `mask file,` so to omit the...

BET interface produces wrong and in_file and command which fails silently without an error

1

I have implemented a BET node in my workflow as I wish to use the binary brain mask for intensity normalization. ``` _bet = fsl.BET() _bet.inputs.mask = True _bet.inputs.out_file =...

MLFlow generates random run names using the random module. Since random.seed is set before instantiation of the mlflow logger, the same run name is always generated. https://stackoverflow.com/questions/76053273/how-can-i-set-the-seed-that-mlflow-uses-to-randomly-generate-run-names My current fix...

Skip images that have already been converted instead of throwing an error

1

### Summary Running heudiconv twice on the exact same source data, with `overwrite=False`. When running the second time I get: `RuntimeError: was asked to convert into ... but destination already...

Unused projection layer in AttentionBlock

1

After wrapping a MONAI AutoencoderKL model in pytorch lightning, I got an error regarding an unused parameter in the custom AttentionBlock implementation. [diffusion_model_unet.py](https://github.com/Project-MONAI/GenerativeModels/blob/main/generative/networks/nets/diffusion_model_unet.py) and [autoencoderkl.py](https://github.com/Project-MONAI/GenerativeModels/blob/main/generative/networks/nets/autoencoderkl.py) line 233: ``` self.proj_attn =...

[BUG] Wrong TimeZero in certain cases

1

**Describe the bug** PET2BIDS and dcm2niix uses AcquisitionTime in cases where SeriesTime should be used. I believe this is an upstream bug in dcm2niix, or perhaps this is just unique...

Wrong TimeZero in certain cases

7

Hi Chris - thanks for this awesome tool! [issue modified from this issue at PET2BIDS](https://github.com/openneuropet/PET2BIDS/issues/367) **Describe the bug** dcm2niix uses AcquisitionTime in cases where SeriesTime should be used. I believe...