ChiaraCaprioli

Hi, Thanks a lot for this convenient package. I'm experiencing the same error with project ```BEATAML1.0-COHORT```, even after reinstalling ```TCGAbiolinks``` with last updates: ``` devtools::install_github(repo = "BioinformaticsFMRP/TCGAbiolinks", ref = "master")...

Thank you for the prompt response. It throws the same error.

After double-checking it works, thank you. However there is another error raised when trying to access maf files to associate mutation to expression data: ``` project = "BEATAML1.0-COHORT" query_exp_project

I encountered the same error and solved it by naming sample.groups, as also explained in the vignette ``` names(sample.groups)

And here an update https://genomebiology.biomedcentral.com/articles/10.1186/s13059-023-03016-6

Hi, I am experiencing a similar issue with Seurat v5 using the function ```LoadXenium()```. I can smoothly load in the dataset from the [vignette](https://satijalab.org/seurat/articles/seurat5_spatial_vignette_2#mouse-brain-10x-genomics-xenium-in-situ), but I can't with my own...