Chengwei94

### Summary I ran the FIRST command with a simple example. A trait error appeared. The file anat_seg-L_Hipp_first.vtk however, is present in the out_file location. ### How to replicate the...

Error with ImageDimPlot

1

Hi, I am trying out the new image spatial toolkit with my own dataset, and I met with some problems wt1.crop

muon.atac.tl.count_fragments_features atac bug

2

Hi there, I think that there is some bug in the count_fragments_features atac features. The gene activity I created from those are very bad looking. This is issue is separate...

How to input similarity_graph back into umap parameters?

2

Hi there, I am trying out similarity_graph to compute the connectivities graph. I am using it to compute clustering(similar to scanpy workflow). However, how do I input this connectivities information...

Exhaust memory when using Eucidean cost.

3

Hi there, I notice that I encoutered the exhaust memory error when using the Euclidean cost, but not when Im using SqEuclidean cost. I am running on MOSTA and it...