Ceres Barros

I am trying to apply the BC Gov bootstrap theme to a Quarto Website (https://github.com/bcgov/FFEC-website), but am having trouble knowing how to do so. Quarto documentation suggests that to use...

`postProcess` operations not being cached when nested in `prepInputs` call?

4

I've noticed that my crop/mask/projection operations do not seem to be cached when running a `prepInputs` call: reprex: ``` Require::Require("PredictiveEcology/reproducible") options(reproducible.destinationPath = "~/reproducible_test/data", reproducible.cachePath = "~/reproducible_test/cache") shpUrl

empty `lists` retrieved from cache as `SpatVectors`

7

Empty lists nested in another list are being retrieved as a SpatVector after caching: ``` Browse[2]> speciesGAMMs speciesGAMMs$Abie_Bal $speciesGamm named list() $originalData Empty data.table (0 rows and 7 cols): speciesTemp,MeasureYear,OrigPlotID1,PlotSize,standAge,biomass......

Unzipping large raster corrupts file

2

I've been hitting an issue with loading a very large raster and have recently traced it down to an issue with unzipping. ``` Require("PredictiveEcology/reproducible@f5b0cf1059534b4dcaa40f1cc238fae992112e8b (HEAD)") mainDir

Event caching of SpatRaster triggers "Error in .External(list(name = "CppMethod__invoke_notvoid",..." AFTER restarting R session

1

I only see the error after _restarting the R session_ and re-running the same code (this is, just rerunning the same call won't show the error). ``` pkgPath

.createCohortData not doing what it says it does?

5

`.createCohortData` is supposed to (among other things) `message(blue("Set B to 0 where cover > 0 and age = 0, because B is least quality dataset")).` However this doesn't seem to...

table size is not a good predictor of algo performance in `vegTypeMapGenerator`

4

I noticed that for a table with 1340184 rows, turning assertions off in `vegTypeMapGenerator`, makes the function use algo == 2 : ``` Browse[2]> nrowCohortData [1] 1340184 Browse[2]> ## use...

As pointed out in https://github.com/PredictiveEcology/Biomass_speciesData/issues/32#issuecomment-1285779794, `plotVTM` should ideally use `Plots` not `Plot`.

`?reproducible::prepInputs(..., overwrite)` says: > Logical. Should downloading and all the other actions occur even if they pass the checksums or the files are all there. However, downloading is not triggered...

preProcess fails when `terra` not installed and `fun = NA`

1

This is a terrible reprex, but more so I don't forget about it: ``` remove.packages("terra") repos