RapClust

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Hello, I have created quant files, while executing the Rapclust --config config.yaml, I got the error mentioned below home/nucleome/.local/bin/RapClust:26: YAMLLoadWarning: calling yaml.load() without Loader=... is deprecated, as the default Loader...

mathavanpu

Handle multiple (> 2) conditions in the likelihood ratio test

1

The test currently used for identifying potential paralogs doesn't effectively use information beyond 2 conditions. We should generalize this code (and determine what is the right way to generalize the...

rob-p

Hello Rob,. I have used Rapclust with the mapping results from sailfish. However, I want to use Salmon. I installed Salmon v0.9, and have the mapping results from Salmon Could...

lychen83

Select reduced transcriptome from clusters

2

Hi, I am comparing clustering results from CD-HIT and RapClust. One of the characteristics of CD-HIT is that it selects one representative transcript per cluster, while rapclust doesn't. Would it...

mpaya

Use nearest neighbor approach to re-cluster contigs.

k3yavi

Add strand specific protocol to pipeline by editing sailfish code.

k3yavi

IdoBar

This PR combines a few fixes to adapt to recent code changes in the functions to write the `stats.json` file (#22), remove the warning when loading the YAML config file...

IdoBar

Hi, I'm not sure if this tool is still being maintained, but I've been using it recently and got this weird error, which appears at the end of the run...

IdoBar