Brian Lohman

error in alleyoop merge

3

Hi Tobias, I have having problems merging samples into a single count table with alleyoop merge. I have run 1) slamdunk all 2) alleyoop collapse I am trying to merge...

Compressed output

1

Hi, I am using bazam to convert CRAM to FASTQ and it is working well. However, it would be very helpful if the output was gzip compressed. Would you consider...

BEAM() warning: the condition has length >1 and only the first element will be used

2

Hi, I am using the BEAM function (monocle 2.14.0) to test for branch dependent changes in in gene expression with the default settings. The function completes and the structure of...

Parsing results VCF gives different counts of TRUTH FN than summary

2

Hello, I'm interested in looking at the variants that hap.py calls as query false positives and truth false negatives. To do this I am parsing the vcf that hap.py writes...