Pedro (Peter) Sanchez

icon company IRB Barcelona icon location Barcelona, Spain icon location BSc Biotechnology. MSc Biostatistics. PhD student in Biomedicine. Widespread curiosity and eagerness about high-throughput Molecular Biology

Results 6 issues of Pedro (Peter) Sanchez

Selection of the number of cells used for the NB regression in SCTransform

Hello everyone 😄 First of all, thank you for the great and easy Seurat framework in general! By default ncells = 5000 in SCTransform(), but I am asking myself what...

Interoperability between RaggedExperiment and maftools

Hi! Is there a way or do you know scripts from anyone for transcribing a `RaggedExperiment` object easily to a `maftools` one? Thank you! Pedro

microSTASIS

22 comment

- Repository: https://github.com/BiotechPedro/microSTASIS - Additional important correspondence: The former version of the package was submitted to CRAN one year ago. Therefore, there is an error regarding the package is in...

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2. review in progress

GitHub dark dimmed

Hi :D FOA, thank you for the cool package! I've been using it for some time now :) Can I suggest you to include the GitHub dark dimmed theme? It's...

Error in fit$ridge_penalty

Hello again :D I am getting an error when running `test_de()`. It is the following one: `Error in fit$ridge_penalty : Illegal name after '$' sign: ridge_penalty`. Do you have any...

Cell cycle regression and n_embedding tuning

1 comment

Hello Constantin, I've been playing a bit with lemur on the following dataset. Basically, a cell line treated under multiple conditions (~10) and I have two replicates of the experiment....