MeShClust

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Hi everyone! I'm having some difficultness in running meshclust on bbash after having install it with conda. `conda install -c lmfaber meshclust` When run the command line, the system interrupts...

LeoVincenzi

Sanger sequences

2

I was wondering if is possible to use MeShClust with Sanger sequences as input data? I have ~600 sequences of full fungal ITS region ~650 bp. I looked online, however,...

carolinapinapaez

Hi, This PR contains several kinds of improvements: 1. Fixes the build on macOS 2. Fixes some bugs and instances of Undefined Behavior / just otherwise surprising behavior 3. Fixes...

H2CO3

Compilation problem

3

Hello, I tried to install MeShClust using "make" after cloning the git repository on Ubuntu but this throws errors, see the log below. I tried updating gcc but this did...

oliemery

error: list not sorted

14

Hi, I ran MeShClust on 700k sequences and got the following error message: ``` Using 16 bit histograms Counting 4-mers [======================================================] 100 % Splitting data Point pairs: 38 Sorting data...

matthpich

wrong package?

1

hi, i downloaded MeShClust-1.0.0 and compiled with make. there's no meshclust in bin. only Red.

afadda91

terminate called after throwing an instance of 'int'

1

Hi, I get this error on 180,000 sequences that are around 500-5000bp long coming from PacBio Iso-Seq data. Any ideas? ``` avg length: 2199 Recommended K: 5 Reading in sequences...

ksahlin

Hello, I've been able to install meshclust with cygwin however, i can't work it in windows. Do you have a suggestion on how to make it work? Thank you

AnaSofia94

Too many sequences below identity

5

Hi again, I tried running MeShClust on 500 sequences that I simulated, all of length ~900nucleotides with most of the sequences highly similar (edit distances 1-20bp). A small portion of...

ksahlin