BioAmelie

why genotype1 have tumor cells?

1

@teng-gao Hi, You mentioned that clone1 is normal cells (https://kharchenkolab.github.io/numbat/articles/results.html). Why did I get two tumor cells? Is it because the p_CNV for these two cells is greater than 0.5?...

how to create geno.rna object in https://rpubs.com/akdes/673120

2

@akdess Hi , Can you tell me how to create geno.rna object in https://rpubs.com/akdes/673120. Best, minfang

scGPT installation error

7

Hi, I am trying to use scGPT for my scRNA-seq annotation, but I met some installation error as follwoing: Getting requirements to build wheel ... error error: subprocess-exited-with-error × Getting...

UCE using multi-gpu

1

Hi @Yanay1 Do you know why UCE repotred the following error When I setted multi-gpu True. I had launched hugging face on command line: `huggingface-cli login` ` (scanpy) root@iZ1pp06g2kc1mpkdbn2uzzZ:/home/jinfang/backup/jinfang/songmf/007-uce/UCE# python...