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                                            n.GoFF

Anyone have more information about PAGA Tree?

Hello c5creative, Did you get the answer to your question? It seems that PAGA tree doesn't require any prior information like start_id. Nicolas

How to change the color when using plot_dimred?

Hi, Something like this: `your_colors

Unimodality constraint

Hi Charles, Thank you very much for your quick response ! To explain a little more, I study a process of adipocytes differentiation by Raman spectroscopy. So I have a...

Unimodality constraint

Hi Charles, I have the impression that optimized spectra I'm getting with MCR-ALS are a bit noisy. I don't feel that my data are so noisy. Which parameter could influence...

Files not found when running compute_metrics() on Windows

Hi @frankligy, I installed the specific commit with pip install git+https://github.com/frankligy/scTriangulate.git@2c45cb7 but I have the same error. Nicolas

Files not found when running compute_metrics() on Windows

Hi @frankligy, Thank you for your response, I reinstalled sctriangulate in a new environnent with only python but I have the same error. Nicolas

Files not found when running compute_metrics() on Windows

The package works with Linux. I take this opportunity to ask you some questions: I would like to use sctriangulate on non transcriptomic data (spectroscopic data imaging). **1) Do you...

clusterprofshiny

Hi, I've the same issue. Have you the solution ? Thank you Nicolas

plot_dimred() error: Must supply a symbol or a string as argument

Hi Pawel125, I have the same issue with my data. The same code works well two weeks ago. ![Capture](https://user-images.githubusercontent.com/25744843/123540009-f6968000-d73c-11eb-9b27-11fd04bf9e2d.PNG) Nicolas

plot_dimred() error: Must supply a symbol or a string as argument

Hi Robrecht, Here is the code, ```r dataset