Benjamín Sánchez

Results 63 comments of Benjamín Sánchez

@hongzhonglu were you able to transform the format available in [SysBioChalmers/Yeast-maps](https://github.com/SysBioChalmers/Yeast-maps) to be compatible with Escher? Is there work somewhere with that?

Update on this: The **model** of yeast-GEM (version 8.4.0) is now available in Caffeine. After #224 was merged, I used those I/O functions to create a model with BiGG ids...

@feiranl thanks for the feedback! those sound like issues with the caffeine platform, not the yeast model, so feel free to document them at https://github.com/DD-DeCaF/caffeine-vue/issues/new If no other issues with...

update: model is now available in the production line of caffeine, at https://caffeine.dd-decaf.eu/interactive-map

thanks for opening this! A good starting point here will be to move the already existing 61 SEED ids and 52 RHEA ids that are available in the model notes...

@CarlMalina which database were you using for finding proper localization of enzymes in mitochondria? We could use the same one but for all compartments in the cell

update: after merging #222, the remaining unbalanced reactions are: model.rxns | Imbalance issue(s) to check | Charge difference | Elemental difference -- | -- | -- | -- r_0013 |...

@hongzhonglu looks good to me. Some additional comments: * I would advise that the issues we create address more specific questions; see for instance issue #13 as it is specific...

@hongzhonglu what do you mean here by "model merge"? I thought that was already included in issue #13?

@hongzhonglu also the part of "genome annotation" I thought was already covered by issue #60. So it looks that this issue is redundant. If so could we close it?