Belinda333

Hi, were you able to solve that problem? I have a similar problem and it would be great if you could share your solution (if you have one :-)) Best...

P.S: These are my calibrations: mrca = Lepidosauria Alligator_mississippiensis Anolis_trachyderma min = Lepidosauria 255 max = Lepidosauria 300 mrca = Rhynchocephalian Sphenodon_punctatus Anolis_trachyderma min = Rhynchocephalian 223 mrca = Gekkotan...

Hi Joseph, that would be fantastic! Thanks! Please find attached the input files (only 15 trees). Please let me know if you need any other data/information. Thanks a lot again!...

Dear Joseph, ah sorry, I attached the input without branch lengths. Okay, I did not know that they have to be rooted... I will root them and send them to...

Dear Joseph, please find attached the rooted trees. Thanks a lot again for helping me! Best wishes, Belinda [rooted_trees_treePL.txt](https://github.com/blackrim/treePL/files/7601726/rooted_trees_treePL.txt)

Dear Joseph, I think I found the issue- I think the dates for Primaderma & Odaxosaurus were not compatible. At least treePL is running now after I removed Odaxosaurus...Anyways, I...

Great! Thanks a lot! No need to stress :)

Dear Joseph, I have one more questions- is treePL running correctly when I see the same message reappearing: calculating without gradient (might want to try a different optad=VALUE) setting NLOPT...

Dear Joseph, thanks a lot! Ok, I see. Yes, Alligator & Sphenodon are the outgroups and Alligator should be the root. However, I already tried to run the analyses without...

In detail, here is what I get when I try to run the priming analyses without Alligator: using system clock for random number seed = 1638178604 tiny branch length at...