Bazzinga

CK test doesn't justify HMM

1

Hey everyone, On performing CK test for HMM, the resultant plot doesn't show anything. what does this mean?? i am attaching the screenshot here: 

Is transition time(mfpt) from one state to another may be different from time observed in MD simulations?

2

Hii, For a particular protein it takes few microseconds to unfold its helix through the MD simulations but through MSM, mfpt for the folded state to the unfolded one is...

To generate pdbs of each clusters at a particular timescale

4

Hii, i want to generate pdbs of each microstate at a particular timescale, please help me out. I already tried few codes as i am new to python and pyemma...