Baxter Worthing

Test data

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Do you have any data that would be a good test of this or the muchsalsa implementation? Thanks!

How to add read quality scores back into GAM

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GraphAligner is a great tool (thank you). I've noticed that the alignments that GraphAligner outputs never include the base-level quality scores from the aligned reads. I understand that this is...

Example out of date

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Hello, Thanks you so much for your hard work on panacus. Just FYI, the example [here](https://github.com/codialab/panacus/blob/main/examples/pangenome_growth_minigraph_cactus.md ) (and presumably the other examples) doesn't seem to work with the latest version...

Say I have a phased VCF of variants called `vars.vcf` I want to genotype in a broader set of samples, so I use it to index and map like this:...