Bai-Wei Lo
Bai-Wei Lo
Thank you! This really helps. It was version 1.8.11, the latest one I get by mamba. I think the memory issue may have something due to our servers as I...
Thanks for the answer, I am trying to merge the clean graphs all together in one single command and it took a lot of time. Is it more time saving...
Dear KVG, Thanks for your response, I will try it. Meanwhile I am still working on running through the whole workflow using a subset of data. I've done link threading...
Hi, I am having the same issue here I run ips on my own with interproscan-5.59-91.0
I generated this file with test fasta provided by interproscan. [test_proteins_redundant.fasta.txt](https://github.com/nextgenusfs/funannotate/files/9973048/test_proteins_redundant.fasta.txt) In case the above does not reproduce the error, these are the first ten sequences from my annotation [test.xml.txt](https://github.com/nextgenusfs/funannotate/files/9973079/test.xml.txt)...
I generated it with the following command interproscan-5.59-91.0/interproscan.sh -i $protein.fa I am using funannotate v1.8.11. When I tried to run funannotate iprscan it output empty xml files
Thank you Jian for the information. The problem is that some of the variants I am analyzing were on the alternative contigs in the hg38 genome, which were not covered...
Hi I have the same issue
I am using lima 2.9.0 and get the error
Hi, I ran into the same error while trying to run hPSMC. Did you fix it?