IntaRNA

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IntaRNA --version does not reflect the installed conda package version?

3

Hi, I installed IntaRNA with "conda create --name IntaRNA bioconda::intarna". It looks fine if I check the installed packages: ``` conda list -n IntaRNA packages in environment at /home/user/conda/envs/IntaRNA: Name...

ChristianRohde

martin-raden

Conda command line and web based do not show the same output result

2

Hi Everyone! I am performing the analysis using the command line version. I double-checked the result on the web, and I noticed that the output is quite different using the...

paolabc

for long target lists and `--out=FILE` IntaRNA crashes with "file handles exceeded" error in MS WSL

martin-raden

no subopt outputs, only for decomposed regions...

martin-raden

- read input data from CSV file - interprete column names as respective arguments and set arguments accordingly - call intarna for each line - append output

martin-raden

IntaRNAplot (JavaScript, Python, ..)

2

- input = seqs, rri, maybe intra-mol structure - create JS-based plotting routine (eg extending FORNA) - run JS-interpreter to produce SVG

martin-raden

seems there is a coredump when requesting `Etotal` CSV output when (target) SHAPE data is provided with `--tShape` (reported by and thanks to Sabine Reisser)

martin-raden

two-step approach with fast pre-filter

3

Following the results and repeating the benchmark from https://doi.org/10.1093/bib/bby032 we want to test whether a combination of a fast pre-filter tool like guugle will improve IntaRNAs runtime and prediction accuracy....

martin-raden

Segmentation fault (core dumped)

1

Hello, I'm running IntaRNA with options similar to RNAup while integrating shape data. I noticed that when I change the tShapeMethod from "D" to "Z" and the tShapeConversion from "O"...

AMA-cs