Avi Ma'ayan

Old notebooks do not load correctly

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https://maayanlab.cloud/biojupies/notebook/uJypTyoKV original notebook link https://nbviewer.org/urls/storage.googleapis.com/jupyter-notebook-generator/uJypTyoKV/Young%20vs%20Aging%20Analysis%20Notebook%20%7C%20BioJupies.ipynb

After clicking on show table results of L1000FWD inside a notebook, you can't close that window because it is too wide.

The BioJupies pipeline can be encoded into a pipeline that is described by the high-level pipeline specification languages CWL and/or WDL. https://www.commonwl.org/ https://software.broadinstitute.org/wdl/

Add progress bar for the alignment process

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User is left waiting for a long time during the alignment process. It would be great to have a progress bar that keeps increasing, perhaps based on an estimate of...

[Gene_Level_Functional_Predictions]: Error in the last cell of the appyter

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https://appyters.maayanlab.cloud/Gene_Level_Functional_Predictions/126dafcda8eabadfb12c8701ad6d93abbc6ea987/

[Harmonizome-ML]: Table produced by does not look right...

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Downloading the table produced by this appyter report, all entries under the "predicted" column appear as zeros... https://appyters.maayanlab.cloud/harmonizome_ml/5182e1b7398a656476dbb616992e1701ce92dbe6/

This needs to be done carefully...