Mike Lee
Mike Lee
Hi there, Thanks for your work building and maintaining the OSF :) I saw this discussed somewhat and addressed to an extent in issue https://github.com/CenterForOpenScience/osf.io/issues/2053, but that seemed to be...
Hiya! Officially opening an issue for thoughts on eventually moving beyond the domain-level SCG collections for completeness and redundancy estimates :) **On the question of which sets of genomes to...
thanks for the great tool!
Hiya, thanks for developing/maintaining this! I think this might be more a question for jupyter (and i do have a [post](https://discourse.jupyter.org/t/disabling-tab-auto-complete-suggestions-in-jupyter-notebook-bash-kernel/17819) for it on the jupyter discourse), but I also...
Thanks for maintaining this great software! I'm having an issue with easy-taxonomy using GTDB (but not NCBI with the same query input), described below. Using a conda install of version...
Hey there, @shenwei356 :) Thanks again for not only additional wonderful software, but excellent documentation as usual! I'm looking for a better way to taxonomically classify predicted coding sequences and...
hi there, thanks for the workflow :) i think it's clear from looking through your excellent documentation, but i just wanted to make sure. The workflow isn't built to work...
it currently doesn't check for custom ones placed in the stored location and report them too, which would be helpful if it did
"Species", at least for NCBI, includes the genus too. So when specifying, e.g. `-L Genus,Species`, it adds the genus twice. I should put in something that accepts the input but...
right now, if a search for a species-level taxon is done, it will retain the space in the output file name, e.g.: `gtt-get-accessions-from-GTDB -t "Bacillus_A anthracis"` creates files like: `GTDB-Bacillus_A...