Andreea Muşat

Generating SidechainNet angles for arbitrary PDB files

6

Hi, I am interested in using [MP-Nerf](https://github.com/EleutherAI/mp_nerf) for a custom dataset and in order to do this I would need to have the functionality of transforming arbitrary PDB entries in...

Hello, I am trying to optimize a cost function defined on a product manifold. I need to manually pass the gradient to the problem. When I try to provide the...

Problems checking gradient on product manifold

1

Hello, As part of a project, I am using PyManopt to work with a product manifold $S^{k-1} \times \mathcal{P}_{n}^k$, where $S^k=\text{Sphere}(k)$ and $\mathcal{P}_n^k = \mathcal{P}_n \times \dots \times \mathcal{P}_n =...

Hi, First of all, thanks for sharing this repo, your code is really useful! I am trying to use MP-Nerf on some custom data. With Jonathan King's help (from SidechainNet),...

In SteepestDescent (and in other optimizers, I believe), the initial point $x_0$ is logged with corresponding iteration number 1 -- for Python, I think it's best if this is indexed...

TrustRegions: Add metric logging for consistency with other optimizers The TrustRegions optimizer did not log metrics during the optimization loop, leading to inconsistencies with other optimizers. This change ensures _add_log_entry(...)...