aicsimageio

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bugfix/convert-dimension-spec-lists-to-slices-when-possible

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## Description Trying to partially address #394: When lists are passed as the indices for a dimension, numpy has trouble getting the slicing order correct. This code change attempts to...

toloudis

Weird reshaping corner case

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## System and Software * aicsimageio Version: 4.6.4 * Python Version: 3.10.4 * Operating System: Linux ## Description Given an image with dimensions: `` , calling ``` data = img.get_image_data("SYX",...

colobas

SLDY file format reader

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## Use Case SLDY is a newer 3i slidebook file format which AICS will be using. From my understanding it is a chunked format stored as numpy arrays. Not sure...

toloudis

surfacing issues during `determine_reader` and `is_supported_image`

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## Use Case In working on napari-aicsimageio (really want the experience of loading any potentially AICSImageIO-supported image to be smooth there) I came across this situation that would be impossible...

tlambert03

Image Format Readers as Plugins

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## Use Case readers for proprietary formats have various licensing requirements which may or may not be compatible with being bundled in aicsimageio. It could possibly enable more community development...

toloudis

Writers streaming as data comes in

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(It's possible this already possible and I didn't realize it! ## Use Case I've been using [pymmcore-plus](https://pymmcore-plus.readthedocs.io) to control microscopes. However, currently it's MDA loop just send out signals to...

ianhi

feature/zarrwriter

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A very minimal zarr writer with lots of assumptions and hardcoded things Resolves #192

toloudis

## Use Case User has a 6000x6000 TIFF file and wants to read a small crop area using dask or otherwise. Currently in the Reader, we only chunk on whole...

toloudis

Conversion from CZI to OME TIFF

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## System and Software * aicsimageio Version: 4.1.0 * Python Version: 3.9.6 64bit * Operating System: Windows 10 ## Description This is my first time trying to save files using...

MosGeo

feature/tiledtiffwriter

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## OmeTiledTiffWriter This PR adds adds a writer to wrap the `bfio.BioWriter(backend="python")`. This writer will only write OME TIFFs with the tile width and tile tags set to 1024 and...

Nicholas-Schaub