Alessandro

With update 0.3.4 I cannot use pagination if I also set the height of the grid

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I'm on version 0.3.4.post2. If I set up the pagination while also choosing a grid height, the pagination will not show up. While, if I don't select any height, it...

Fixed issue #248

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## PR checklist - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should be tested,...

PLOT_CONSENSUS_PEAKS worflow does not produce the upset plot

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### Description of the bug Hello, The workflow `NFCORE_CUTANDRUN:CUTANDRUN:PEAK_QC:PLOT_CONSENSUS_PEAKS` is run with 0 exit code, however, while the folder `${params.outdir}/04_reporting/consensus_upset_plots` is created, the upset plots are not produced. Here is...

### Description of feature Hello, first of all thank you for your effort in maintaining and improving the pipeline. I noticed that `.tab` files produced by deeptools take up a...

### Description of the bug Hello, My multiQC does not report all samples. Given that the samples gets correctly analysed and I can find their output in the `results` folder,...

### Description of feature Hello, given the output size of `.allValidPairs` and `.txt` files, and their high compression ratio, I suggest adding a step in the pipeline to compress them....

Panic when renaming an invalid symlink to a file which already exists

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Hello, When renaming an invalid symbolic link such that the renamed file already exists, a panic is thrown. Folder structure: ```bash $ ls -l -rw-r--r--@ 1 [USER] [GROUP] 0 Jun...