Maksym Prylutskyi

it seems chainCleaner doesn't see it's dependency NetFilterNonNested.perl chainCleaner /users/hpctestuser/mprylutskyi/makechains/make_lastz_chains/human.cow.before_cleaning.chain.gz /users/hpctestuser/mprylutskyi/makechains/make_lastz_chains/deschrambler_test_files/target.2bit /users/hpctestuser/mprylutskyi/makechains/make_lastz_chains/deschrambler_test_files/query.2bit /users/hpctestuser/mprylutskyi/makechains/make_lastz_chains/human.cow.cleaned.chain removedSuspects.bed -linearGap=loose -tSizes=/users/hpctestuser/mprylutskyi/makechains/make_lastz_chains/deschrambler_test_files/target.chrom.sizes -qSizes=/users/hpctestuser/mprylutskyi/makechains/make_lastz_chains/deschrambler_test_files/query.chrom.sizes -LRfoldThreshold=2.5 -doPairs -LRfoldThresholdPairs=10 -maxPairDistance=10000 -maxSuspectScore=100000 -minBrokenChainScore=75000 Verbosity level: 1 foldThreshold: 0.000000 LRfoldThreshold: 2.500000...