AimSchina

repDiversity -raref Error

6

Dear all, I am getting an error while using the repDiversity function with method set to raref, the issue is the same as https://github.com/immunomind/immunarch/issues/19, however I don't understand how to...

Hi, I have been having an issue getting biospecimen info via two different ways. Using TCGAbiolinks_2.15.2. _First Method from xml:_ ` query

Hey, thank you for providing this beautiful software! I have been running ecotyper on different public bulk RNA-Seq datasets, and one is giving me trouble: > Running cell state recovery...

Error in IOBR::calculate_sig_score() -- GSVA::gsva() defunc

3

Hi, The IOBR::calculate_sig_score() function no longer works with R version 4.4.0, Bioconductor release 3.19. Particularly the function calculate_sig_score_ssgsea() fails because the previous GSVA API is defunc: `Error in GSVA::gsva(expr =...