Ahmed M. A. Elsherbini comments

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                                            Ahmed M. A. Elsherbini

snippy-multi is not exported

Here from October-2021,snippy-multi does not exist in conda ?

CPLEX API of Python

Hi , as I had now trouble with installation (carve can not find the solver despite that python can import it and print the version of cplex). I am thinking...

troubles with updating ncbi database - Can't read TSV file

The same here, did you get any solution !

troubles with updating ncbi database - Can't read TSV file

Thank you, your solution seems to work with me :)

Is the job status (number of submissions ahead of mine) accurate?

I witness the issue with the discrepancy between the API and the web service also. Unfortunately, manually I did the job. However, if someone has thousands of sequences, what is...

Inquiry about the coding density equation

Thank you Oliver for your response. Summing up all the bases of the annotated genome is (~the sum of the whole length of CDS) / the sum of the total...

Inquiry about the coding density equation

Absolutely, you are right. I followed this with tools like Panaroo and PPanGGolin for gene presence/absence comparison. Mobilome ( insertion elements ) is the main thing being enriched in the...

Not all biological observation matrix are downloaded

Hi Manar, Long time I know , if you are still interested in this topic. I made a simple script to overcome it. https://github.com/AhmedElsherbini/download_hmp_data try it if you still has...

Error during manifest download from HMP: "Skipping file ID "fileID" as none of the URLs [HTTPS'] succeeded"

Hi nano, I had your own problem and I made a simple script to overcome this issue, https://github.com/AhmedElsherbini/download_hmp_data I see it is working with your manifest file.