Ahhgust

I'm getting a heap overflow associated with memory set in the SetCigar function. The simplest way to reproduce the problem is: #include #include #include #include #include #include #include "SeqLib/RefGenome.h" #include...

Position() gives the 0-based position of the start of the read (that is, it's the start position in the genome). PositionEnd() is *not* the (1-based) stop position in the genome...

Paired end/mate mair reads

4

First I'd like to thank you for the time you've dedicated to this project. I really (for one) really appreciate it! I have two questions than can be construed as...

Fermi assembler issue

1

I'm having some with the Fermi assembler. I've tried various versions of the attached code; none manage to produce any contigs. Further, calling GetSequences() after calling PerformAssembly produces mangled strings...

possible error in validating the genetic map

1

Hi! I'm trying to re-use one of our standard genetic maps w/ QUILT (which in turns uses STITCH), and *some* of the genetic map files are generating the following error....

Now supports extracting gencall scores (GCALL) as real numbers

5

I added support for exporting an extra field; the GenCall score (without Phred scaling, so as to have better precision). (And I use git forking mechanics once in a blue...

Hi! In truth this isn't a bug report but it is instead a feature request (it's a small lift however). It'd be very nice if we could estimate the kinship...