Ahad-Allen

Error when adding a list of lists to the trials colums of an nwb file

3

## Description When using the add_trial_column functionality to add a list of lists, I receive the following error message when exporting the generated NWB file: ```File "C:\Users\ahad.bawany\Anaconda3\envs\openscopeophys\lib\site-packages\h5py\_hl\selections.py", line 298, in...

Ophys NWB Conversion fails if a dff file is missing

9

**Describe the bug** I have already spoken with Adam and Chris about this issue in person, but the crux of the problem is that several planes of sessions from the...

The function here: https://github.com/AllenInstitute/AllenSDK/blob/master/allensdk/brain_observatory/ecephys/_probe.py#L263 seems to add the LFP data to the probewise NWB files twice. This is done using a link, so no extra memory is used, but it...

Currently, the optotagging information generated by the write_nwb module of the SDK is a timeseries. There exists an optogenetic series data type that would be able to store more specific...

**Describe the bug** Currently, the projections.py code for ophys projections uses imread to process the image paths it receives from LIMS. This is problematic, as the images are were changed...

Feature non behavior ophys nwb

2

# Overview: Currently, the nwb modules for Ophys conversion are specialized for behavior ophys files. Unfortunately, there are some problems caused by this when trying to convert sessions which are...

[Bug]: Issue with schema not being compatible with OpenScope namespace/yaml

3

### What happened? One of our OpenScope project packaged in 2022 is about to be published. We packaged the data in NWB files on Dandi but our collaborators found some...