Varuni Sarwal

icon indicating a website link https://addicted-to-coding.github.io/webpage/ icon indicating an email [email protected]

icon company University of California Los Angeles icon location Los Angeles, California icon location CS PhD student at UCLA

Results 4 comments of Varuni Sarwal

Empty output file

Hi zeeev, Even when I remove the pipe to the whamg stdout to the filtering script, I get an empty output with only a header. I am using mouse data...

Empty output file

when I run /u/home/a/angelakl/project-zarlab/sv-project/install/wham/bin/wham -e $EXCLUDE -f ~/reference.genome/mm10.fa -t ~/A_J.bam A , the output is INFO: WHAM-BAM will only score within bed coordiates provided: GL000207.1,GL000226.1,GL000229.1,GL000231.1,GL000210.1,GL000239.1,GL000235.1,GL000201.1,GL000247.1,GL000245.1,GL000197.1,GL000203.1,GL000246.1,GL000249.1,GL000196.1,GL000248.1,GL000244.1,GL000238.1,GL000202.1,GL000234.1,GL000232.1,GL000206.1,GL000240.1,GL000236.1,GL000241.1,GL000243.1,GL000242.1,GL000230.1,GL0002371,GL000233.1,GL000204.1,GL000198.1,GL000208.1,GL000191.1,GL000227.1,GL000228.1,GL000214.1,GL000221.1,GL000209.1,GL000218.1,GL000220.1,GL000213.1,GL000211.1,GL000199.1,GL000217.1,GL000216.1,GL000215.1,GL000205.1,GL000219.1,GL000224.1,GL000223.1,GL000195.1,GL000212.1,GL000222.1,GL000200.1,GL000193.1,GL000194.1,GL000225.1,GL000192.1,NC_007605 INFO: WHAM-BAM will using the...

Scalability over larger datasets

Thanks for the prompt reply. Yes, this is related to issue #4 which I posted earlier. We can reproduce this by create a random array of size (1000,8). Here's a...

Scalability over larger datasets

Hi, I was wondering if you were able to reproduce this on your end and had any solutions?