Adam Taranto
Adam Taranto
Hi Ryan, Is there a way to have Filtlong dump the length and quality score (calculated against an Illumina reference set) so that I can generate those qual x length...
Lines 250 and 285 in histogram.py cause the Python3 print function to bug out when trying to parse the default "options.dot" character, "∎". Throwing an error like this: **Traceback (most...
Will the scaffolding process be negatively affected if non-primary alignments (0x100) and supplementary alignments (0x800) are scrubbed from the Hi-C alignments?
Hi Liz, I'm getting an error when I run get_abundance_post_collapse.py on a set of collapsed flnc isoforms. The read names in unpolished.cluster_report.csv seem to match those in flnc.collapsed.group.txt (see examples...
I have BLAST and Minimap2 installed in my base miniconda env but Bandage cannot find them when I try to build a database. Where does Bandage search for these executables?
Thanks for all your great work advancing this fork of Bandage. I'm working with a Miniasm graph that does not have contig depth data stored in the gfa file and...
jcvi.graphics.ribbon module is a modified version of the synteny module which allows plotting of arbitrary alignments and multiple genomic feature tracks. Ribbon plots are not based on ortholog linkages but...
When using the --use-median setting, is the "mean" in *.mosdepth.summary.txt output file actually the median value? If not, can it be?
The new "Create assignment" sidebar makes it difficult to quickly create nbgrader cell types in an existing notebook. I have to select the cell in the notebook then scroll up...
### Operating system Ubuntu ### Python 3.11 ### `nbgrader --version` =>0.9.0 ### `jupyter notebook --version` 6.5.5 ### Expected behaviour Trying to activate nbgrader extension with command: `jupyter nbextension install --sys-prefix...