ANTsPyNet
ANTsPyNet copied to clipboard
ANTsX
Pre-trained models and utilities for deep learning on medical images in Python
Hello there ANTSpyNet gurus- I'm trying to get the DL super-resolution to work. I'm experiencing an error that unfortunately we've already seen #50 and #57 , yet reading through these...
Hi, I am making paper comparing segmentation methods, and as DeepFlash for hippocampal subfields segmentation seems new, I want to include it in my comparison. The website you reference doesn't...
The default cache directory of "~/.keras/ANTsXNet" is troublesome for Singularity users because singularity has to run as the user calling singularity, so users either have to mount their own home...
Hi, I have successfully used the built in and trained super-resolution module of antspynet, which scales/resamples to higher resolution with double the dimension across all axis of the original image....
Hi encountered the errors, while running image superresolution module of antspynet import keras as ke import tensorflow as tf import numpy as np image = ants.image_read(ants.get_ants_data('r16')) import antspynet.architectures as apa...
Machine: MacBook Pro M1 2020 OS: macOS Monterey 12.0.1 Python version of venv: Python 3.8.12 Pip version: 21.3.1 I have installed Tensorflow using [this guide](https://github.com/apple/tensorflow_macos/issues/153). When I execute `pip install...
``` import ants x = ants.image_read(ants.get_ants_data('r16')) mask=ants.get_mask( x ) patches = antspynet.extract_image_patches(x, patch_size=tuple([32,32]), max_number_of_patches=int(mask.sum()), return_as_array=False, mask_image=mask, randomize=False ) reconstructed_image = antspynet.reconstruct_image_from_patches( patches, mask, domain_image_is_mask=True ) ``` the above fails ```...
https://github.com/ANTsX/ANTsPyNet/blob/d39ee8333149a84f6bb72b217419dacfd3872a0d/antspynet/utilities/white_matter_hyperintensity_segmentation.py#L76-L79 causes an error in some installations of python / numpy / tensorflow / antspynet ( can reproduced on ubuntu 18.04 with recent install ) the issue is in multiplying...
related to a variety of compatibility issues: * statsmodels --- the factorial issue * tensorflow-gpu and tensorflow --- newer versions conflict with our keras usage ( I think ) *...