Akshata N. Rudrapatna

icon location MD-PhD Student at the University of Cincinnati/Cincinnati Children's Hospital Medical Center

Results 5 issues of Akshata N. Rudrapatna

Update predict.md

Removed certain flags (-n, --name) that do not yield expected behavior and added one flag (--tf) that can also specify TFs.

Update plot.py

Fixed an invalid plotting parameter (i.e., style), which generates the following error message. The corrected plotting parameter permits plotting of figures generated through maxATAC train(), as shown in the below...

Update parser.py

Synced comments with those found in .md files.

Update benchmark.md

Added additional arguments with associated descriptions.

Update threshold.py

**_Issue_**: - `maxatac predict` expects the following column names in a cutoff file: - 'Monotonic_Avg_Precision', 'Monotonic_Avg_Recall', 'Standard_Thresh', 'Monotonic_Avg_log2FC', 'Avg_F1'. - However, `maxatac threshold` outputs a file with the following column...