ABU-TO
ABU-TO
After my testing, you might need to store the original expression matrix in .raw. —> adata.raw = adata.
It may be an issue with the current version of Anndata, and I have encountered a similar problem before. I tried to individually save some items stored in the .uns...
Have you checked for 'null' values in your 'obs', 'obsm', and 'uns'? It seems that there are some null values in the DataFrame. Personally, I have encountered an issue where...
It seems like you should check your adata object. Can you run the tutorial successfully?
sdm.weight_matrix(adata, l=120, cutoff=0.2, single_cell=False) # weight_matrix by rbf kernel The parameter ‘l =120’ here might solve this problem. Also, I found that the parallel parameter ‘nproc=8’ can significantly reduce the...