Ahmed Alhendi

icon indicating a website link https://www.researchgate.net/profile/Ahmed_Alhendi/

icon company UCL icon location London, UK icon location Research Fellow in Bioinformatics. Interested in large-scale genomic analyses.

Results 5 comments of Ahmed Alhendi

sgeadmin's job is not allowed to run in any queue

same issue here

DietSeurat does not remove data and scale layers

I had the same issue. Using`removeLayersByPattern` from Seurat.utils package worked for me. It removes all scale.data layers. ```R library(Seurat) library(Seurat.utils) seurat.obj

Cannot install ComplexHeatmap

Hi Installing ComplexHeatmap from Biocondctor should work fine in most cases. However, it seems that you have problems with ComplexHeatmap dependancies that you need to solve frist. I would try...

counts of rows of fpkm_matrix inconsistent with that of counts_matrix

Hi there Thanks for reporting this issue. For accurate quantification of FPKM of RNA-Seq data, the read counts need to be normalised by feature effective length [Lee et al. 2011...

counts of rows of fpkm_matrix inconsistent with that of counts_matrix

> Hello， > there is a question for me to understand for the countToFPKM,which is what is meanFragmentLength？It was ued in example code. So, could you give more details description...