Tianhua Liao

Dear author, I also have concerns about that issue. What I want to do is predicting the phage/prophage from the assembled genome sequences. Thus generally we need to apply it...

I also get the same situation. I guess mostly is a problem of multiprocessing since it usually gets stuck when the second time of 'processing line' was called. Which mentioned...

maybe replace `sh.locate` with `sh.find` in phigaro/helper.py would fix your problem..

the command `sh.locate` rely on the binary file `locate` in your PATH. Maybe it doesn't install at your OS. @snayfach Just install it or replace `sh.locate` with `sh.find`

Hi, recently I also encouter this issue. In my data, I think the 'breaking' is resulted by the wrongly short-read assembly. To test it, you could also try long-read only...

I apologise for the stalled tmap version. This problem is similar to issue #15 You can see that this error was generated by the "networkx" rather than the "tmap" if...

@meddwl It sounds like it is a different issue and I believe it would be useful if you could give a screenshot or outputs from the installation. And I am...

The SWORD2 is an excellent software and it uses an clever idea to segment the protein structure. I can understand the extra thing before. But here are two examples I...

For me, I use the offline version. But I also tried online server for validation. The large number of colors are because I use all the "Junctions" to separte the...