Zachary Munro
Zachary Munro
@jenniferlu717 Any chance this could get merged? I think people would find it useful
@jenniferlu717 bump
@jenniferlu717 Any update on a good kmer length to use when building the kraken2 database for classifying nanopore reads?
This was brought up in #81 and someone linked an interesting paper. I have gotten decent results using a `k` of 26 and default `l`
Ah sorry, I see that you already commented there. But I am definitely eager to know what the repo's maintainers think!
@jenniferlu717 Would it be sufficient if I were to provide you with a fastq file for a sample sequenced on ONT machinery, and a fastq file for the same sample...
If you want simulated long reads with errors in them then there are some tools listed on this page: https://github.com/rrwick/Badread/tree/master/comparison
@jenniferlu717 I'm not sure whether that goal is really possible unfortunately. Nanopore reads will have varying errors in them, since the reads could have been produced by different basecallers, and...
I just had it suggest someone's email address randomly when writing some code that said `LOGIN_NAME:` Here is a screenshot of it: This was using claude-4-opus MAX in Cursor