yingyonghui
Error in circosPlot(object = tumor.obj, select.ident = select.ident, filter = TRUE) : No filtered LR interaction detected, set the parameter "filter" as FALSE and try again
Hi yonghui, I have encountered an error, as the title shows: Here is the code: select.ident = '0' ## I have not matched the name with the cluster; therefore I input "0" as the ident pdf('circosPlot.Endothelial.count.filtered.pdf',height=6,width=6) circosPlot(object = tumor.obj, select.ident = select.ident, filter=TRUE) dev.off()
I also encountered an error as "Error in array(x, c(length(x), 1L), if (!is.null(names(x))) list(names(x), : 'data' must be of a vector type, was 'NULL'" when I ran the following code: acti.path.dat <- diffAllPath(object = tumor.obj, only.posi = TRUE, only.sig = TRUE)
Hi @Leo-Huang123 , Sorry for the late response. The circosPlot function offers visualization for both non-filtered (statistically significant) and filtered (pathway-associated) LR interactions. Enabling the 'filter' parameter as TRUE necessitates proactive screening of pathway-associated LRs. Regarding the other question, could you kindly furnish an example dataset that I can utilize to replicate the error and debug the package?
Best, Yonghui
