xychen233

Dear Canu team, I'm assembling a genome with canu 2.2, and it's actually doing quite well. I wanted to see what reads it used, but found that the readNames.txt file...

No differential kmers

2

Hi, I am trying to use the SubPhaser to phase the subgenomes of my species. However, after filtering differential kmers, no differential kmers were remained. I used parameter of this...

error occurred after setting the "yahs -l" parameter

1

Hi yahs developers. I have encountered an issue and would like to seek for your help. YaHS can only handle up to 45,000 contigs. So I set the "yahs -l"...

expected output type 'Null', got 'Int64'; set `return_dtype` to the proper datatype

3

老师您好！感谢您发布的CPhasing软件！我最近正在用它测试组装的单倍型基因组，我遇到了一些错误不知道应该怎么解决，还望老师可以给一些建议！ 这是我的运行命令： ``` export PATH=/media/APP/miniconda3/bin/:$PATH export PYTHONPATH=/media/APP/python3.12/site-packages:$PYTHONPATH export PATH=/media/APP/CPhasing/bin:$PATH export PYTHONPATH=/media/APP/CPhasing:$PYTHONPATH cphasing pipeline -f genome.fasta -hic1 HiC_1.fq.gz -hic2 HiC_2.fq.gz -t 40 -n 47 ``` 我遇到的问题是在第三步： ``` #----------------------------------# # Running step...