GNOVA

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Problem with NaNs

7

Hi Tony, I've been trying to use GNOVA in my project. For some of the sumstats files I'm using, I get the following error: ``` Traceback (most recent call last):...

rmalik203

Program frozen for a long time without error/output

1

Hi, Thanks for this tool. I ran the code to estimate the rg between two traits, but the code got stuck for more than 3 hours, without outputting any files....

anbai106

Hi! Thank you for such an amazing tool. I'm trying to access the plink reference file and the annotation files but it seems that they are not available. Would it...

juditcd

link to download annotation files dead

1

Hello, the link given in the Readme to download the annotation files is dead: http://genocanyon.med.yale.edu/GNOVAFiles/annotations.tar.gz Is it possible to fix it ? Best, Elise

eliselucotte

I understood that the corrected p-value is the p-value adjusted for sample overlap. However, in my case I am sure that there is no sample overlap. Therefore, could I only...

corunesa

Could you give any information on your MAF stratified annotations from 1000g, what were the MAF cut-offs for each quartile? I haven't been able to find this anywhere (including in...

bperry089

Bug

1

TypeError: __init__( ) got multiple values for keyword argument 'keep_snps'

ShiqiangCheng

Hello, I have my own ld scores computed with the ldsc software, and was hoping to use them with GNOVA; however, the GNOVA CSV format for LD files seems to...

kaskarn

Hi, I am having this error repeteadly, even when I have formatted files according to readme specifications. Could you help me with this issue? Thanks! Preparing files for analysis... Traceback...

frotsko