galah

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Updates the requirements on [disjoint](https://github.com/jogru0/disjoint) to permit the latest version. Changelog Sourced from disjoint's changelog. [v0.7.0] - 2024-02-06 Added Implemented root_of for DisjointSet and DisjointSetVec<T>. [v0.6.0] - 2023-04-23 Added Implemented...

dependabot[bot]

Updates the requirements on [env_logger](https://github.com/rust-cli/env_logger) to permit the latest version. Release notes Sourced from env_logger's releases. v0.11.1 What's Changed fix(fmt): Fix passing of WriteStyle when using Target::Pipe by @​Bobo1239 in...

dependabot[bot]

Switch genome name lookup to hashmap

2

I had a go, but I can't work out this compiler error: ``` Compiling galah v0.3.1 (/mnt/hpccs01/home/aroneys/src/galah) error[E0277]: the trait bound `&&str: Borrow` is not satisfied --> src/skani.rs:83:52 | 83...

AroneyS

add bindash support instead of dashing

1

Hello Ben, I was investigating MinHash algorithm heavily in the past several months. In terms of simple minhash, that is to estimate jaccard in traditional manner, b-bit One Permutation MinHash...

jianshu93

``` pub fn generate_galah_clusterer std::result::Result

wwood

Failed to find sufficient version of dashing

1

Hi When installing galah through conda, dashing version 1.0 is installed instead of 0.4.0. Hence I got this error ``` [2023-06-07T09:03:52Z INFO galah::cluster_argument_parsing] Read in genome qualities for 338 genomes....

michoug

Compilation error

2

Hello, I was looking to compile galah for the use of the CoverM tool, however I encountered an error consistently that seems to come from the build calling two versions...

Rridley7

I have a case where a genome with 99% identity 0.1 contamination and 60 contigs is assigned to a cluster where the cluster representative has only 50% completeness (50 contigs)....

SilasK

Low quality genomes end up as seperate species.

1

Low-quality genomes cluster apart. I used galah on large datasets. What I noticed is that often a low complete genomes are selected as separate species, which are then annotated by...

SilasK

Hallo, would it be possible to make the intermediate output available e.g. the FastANI comparison?

SilasK