wdecoster
Conda missing package for Mac M3
Hi,
I'm facing issues in installing chopper through conda...using bioconda channels give a missing package result.
Actually, I got the main problem is the distribution...as mac from M processor series are arm processor, the package is actually available for osx-64 platform. Even setting bioconda correctly, the only way to install it is to have an environment set to osx-64 instead of osx-arm64:
mamba create -n chopper --platform osx-64 -c bioconda chopper
This actually solved problem of installation, hope can be helpful for others...sorry for the "not useful" issue.
Ah, thanks for letting me know, and sharing the solution. I will see if this is something I can fix...
this should be fixable by changing the recipe in the bioconda-recipes. I believe something like this would work
`{% set version = "0.9.0" %}
package: name: chopper version: {{ version }}
build: number: 0 run_exports: - {{ pin_subpackage('chopper', max_pin="x.x") }} skip: false # [not (linux-64 or osx)] platforms: - linux-64 - osx-64 - osx-arm64
source: url: https://github.com/wdecoster/chopper/archive/v{{ version }}.tar.gz sha256: ae5b6f8f5ffde45582998b63cb45b4221b25ee37a9fde7a256e653c7f3f12075
requirements:
build:
- rust >=1.64
- autoconf
- make
- {{ compiler('cxx') }}
- pkg-config
- cmake
- zlib
- clang
host:
- zlib
- clang
run:
- zlib
- clang
test: commands: - chopper --help
about: home: https://github.com/wdecoster/chopper license: MIT license_file: LICENSE summary: A rust command line for filtering and trimming long reads. dev_url: https://github.com/wdecoster/chopper doc_url: https://github.com/wdecoster/chopper#readme notes: | includes native support for Apple Silicon (M1/M2/M3) processors `
Thank you! I have updated the recipe based on your suggestion.
https://github.com/bioconda/bioconda-recipes/pull/51754