ClusterMap icon indicating copy to clipboard operation
ClusterMap copied to clipboard

Cannnot create environment based on the environment.yml

Open Yifan-debug opened this issue 1 year ago • 0 comments

Hi

Thanks for the package. I encountered a weird problem. I started from the very beginning by running conda env create -f environment.yml, but I got an error that says PackagesNotFoundError. I'm quite new to the Conda environment. Do you have any idea how to fix this?

conda env create -f environment.yml Channels:

  • anaconda
  • conda-forge
  • defaults
  • bioconda Platform: linux-64 Collecting package metadata (repodata.json): done Solving environment: failed

PackagesNotFoundError: The following packages are not available from current channels:

  • arpack==3.7.0=hefb7bc6_2
  • blosc==1.21.0=he49afe7_0
  • brotli==1.0.9=h0d85af4_6
  • brotli-bin==1.0.9=h0d85af4_6
  • bzip2==1.0.8=h0d85af4_4
  • c-ares==1.18.1=h0d85af4_0
  • ca-certificates==2021.10.8=h033912b_0
  • certifi==2021.10.8=py38h50d1736_1
  • fonttools==4.28.5=py38h96a0964_0
  • freetype==2.10.4=h4cff582_1
  • glpk==4.65=h0f52abe_1004
  • gmp==6.2.1=h2e338ed_0
  • hdf5==1.12.1=nompi_h2f0ef1a_100
  • icu==68.2=he49afe7_0
  • igraph==0.9.5=ha5be149_0
  • jbig==2.1=h0d85af4_2003
  • jpeg==9d=hbcb3906_0
  • kiwisolver==1.3.2=py38h12bbefe_1
  • krb5==1.19.2=hcfbf3a7_0
  • lcms2==2.12=h577c468_0
  • leidenalg==0.8.8=py38ha048514_1
  • lerc==2.2.1=h046ec9c_0
  • libblas==3.9.0=12_osx64_openblas
  • libbrotlicommon==1.0.9=h0d85af4_6
  • libbrotlidec==1.0.9=h0d85af4_6
  • libbrotlienc==1.0.9=h0d85af4_6
  • libcblas==3.9.0=12_osx64_openblas
  • libcurl==7.78.0=hb8e4fae_0
  • libcxx==12.0.1=habf9029_0
  • libdeflate==1.7=h35c211d_5
  • libedit==3.1.20191231=h1de35cc_1
  • libev==4.33=haf1e3a3_1
  • libffi==3.3=hb1e8313_2
  • libgfortran==5.0.0=9_3_0_h6c81a4c_23
  • libgfortran5==9.3.0=h6c81a4c_23
  • libiconv==1.16=haf1e3a3_0
  • liblapack==3.9.0=12_osx64_openblas
  • libllvm11==11.1.0=hd011deb_2
  • libnghttp2==1.43.0=h6f36284_1
  • libopenblas==0.3.18=openmp_h3351f45_0
  • libpng==1.6.37=h7cec526_2
  • libssh2==1.10.0=h52ee1ee_2
  • libtiff==4.3.0=h1167814_1
  • libwebp-base==1.2.1=h0d85af4_0
  • libxml2==2.9.12=h93ec3fd_0
  • llvm-openmp==12.0.1=hda6cdc1_1
  • llvmlite==0.37.0=py38h872f124_0
  • lz4-c==1.9.3=he49afe7_1
  • matplotlib-base==3.5.1=py38hc7d2367_0
  • metis==5.1.0=h2e338ed_1006
  • mock==4.0.3=py38h50d1736_2
  • mpfr==4.1.0=h0f52abe_1
  • ncurses==6.2=h0a44026_1
  • numba==0.54.1=py38h41dd760_0
  • numexpr==2.8.0=py38ha53d530_0
  • numpy==1.20.3=py38had91d27_1
  • openssl==1.1.1l=h0d85af4_0
  • pandas==1.3.5=py38ha53d530_0
  • pillow==7.2.0=py38hef457fe_2
  • pytables==3.6.1=py38h5215406_4
  • python==3.8.5=h26836e1_1
  • python-igraph==0.9.8=py38h3dab7cd_4
  • readline==8.0=h1de35cc_0
  • scikit-learn==1.0.1=py38h37f3bb3_3
  • scipy==1.7.3=py38hd329d04_0
  • setuptools==50.3.0=py38h0dc7051_1
  • sqlite==3.33.0=hffcf06c_0
  • statsmodels==0.13.1=py38hbe852b5_0
  • suitesparse==5.10.1=h7aff33d_1
  • tbb==2021.4.0=h940c156_1
  • tk==8.6.10=hb0a8c7a_0
  • unicodedata2==14.0.0=py38h96a0964_0
  • xz==5.2.5=h1de35cc_0
  • zlib==1.2.11=h1de35cc_3
  • zstd==1.5.0=h582d3a0_0

Current channels:

  • https://conda.anaconda.org/anaconda/linux-64
  • https://conda.anaconda.org/conda-forge/linux-64
  • https://repo.anaconda.com/pkgs/main/linux-64
  • https://repo.anaconda.com/pkgs/r/linux-64
  • https://conda.anaconda.org/bioconda/linux-64

To search for alternate channels that may provide the conda package you're looking for, navigate to

https://anaconda.org

and use the search bar at the top of the page.

Yifan-debug avatar Aug 20 '24 02:08 Yifan-debug