bxtools

bxtools copied to clipboard

Hi! Thank you for developing this tools. I would like to use the function split in order to generate a bam file per single cell. The structure of my bam...

JihedC

Generate MI tags [feature request]

4

I've aligned reads to a de novo assembly using BWA-MEM rather than Long Ranger align. The BWA alignments have the `BX` tag but no `MI` tag. Would you consider implementing...

sjackman

SAM to FASTQ functionality

3

Say you are only given a longranger processed BAM file that you would like to use for other purposes. Many tools cannot use BAM format directly. It could be useful...

JustinChu

error installing - lzma

4

I'm trying to install bxtools locally on our server. When I run the command: `./configure --prefix=/home/april/local/bxtools/0.0/` Configure runs fine until I get the error: ``` checking for library containing lzma_end......

AprilJack

installation error

3

Hello team, Thanks for developing bxtools. While installing i encounter this error. thread_pool.c: In function ‘hts_tpool_init’: thread_pool.c:676: warning: implicit declaration of function ‘pthread_mutexattr_settype’ thread_pool.c:676: error: ‘PTHREAD_MUTEX_RECURSIVE’ undeclared (first use in...

frankbioinfo

../configure && make doesn't work in a subdirectory

4

It's helpful to be able to build in a subdirectory when working with multiple architectures, such as both Linux and macOS. ```sh mkdir build cd build ../configure make ``` ```...

sjackman